FastQCFastQC Report
Wed 8 May 2024
EGAF00007960255

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960255
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521731
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40380.7739620609087825No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9820.1882195997554295No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7050.13512710573073097No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6950.1332104091955433No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6770.1297603554322055No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6040.11576847072533546No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5860.11231841696199767No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5550.10637665770291586No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5520.10580164874235957No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)