FastQCFastQC Report
Wed 8 May 2024
EGAF00007960264

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960264
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences545154
Total Bases23.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14260.26157746251517916No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT13890.254790389504617No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13600.24947079173958184No Hit
CATACGGTCCAGGTCTTCGGTCGCGGAGCGAGCACGGGTGCTGG12820.23516290809569404No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12020.22048815564042454No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10900.19994350220304719No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10000.18343440569086902No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9910.1817834960396512No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9710.17811480792583378No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9240.16949339085836296No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7990.14656409014700433No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7760.14234509881611435No Hit
GGACTGGCCACGGTGGCCACCATCGTAGCGTTCCCAGCCGCTCG6360.11666428201939269No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6350.11648084761370181No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6000.1100606434145214No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5920.10859316816899446No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG5500.10088892312997795No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)