FastQCFastQC Report
Wed 8 May 2024
EGAF00007960265

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960265
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences545154
Total Bases16.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27520.5048114844612716No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19470.35714678788012194No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17580.3224776852045477No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT14870.2727669612623222No Hit
ATGTCTTCTCGCCGCCGTAGCTCTTCCCGTC13380.2454352348143827No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11590.21260047619571718No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11020.20214471507133763No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10250.18802026583314072No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9740.1786651111429064No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9150.16784248120714512No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7870.1443628772787139No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7840.1438125740616413No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6640.12180044537873702No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6600.12106670775597354No Hit
GGTTGGGGTCGTCGCTACGAACCAGCACCGA6350.11648084761370181No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6320.11593054439662921No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5990.10987720900883054No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5930.10877660257468533No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT5610.1029067015925775No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC5520.1012557919413597No Hit

[OK]Adapter Content

Adapter graph