FastQCFastQC Report
Wed 8 May 2024
EGAF00007960267

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960267
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521101
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43650.8376495151611685No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25880.4966407663773434No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18260.35041191630797097No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15580.29898234699223375No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT14150.27154044993197096No Hit
ATGTCTTCTCGCCGCCGTAGCTCTTCCCGTC12790.24544186251801475No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10370.19900172903141616No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10270.19708271525097823No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8920.1711760292150658No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8770.16829750854440886No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7620.14622885006937233No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7090.13605807703305117No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6620.12703871226499278No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6440.12358448746020445No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6130.1176355447408468No Hit
GGTTGGGGTCGTCGCTACGAACCAGCACCGA5900.11322181304583949No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT5720.10976758824105116No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5570.10688906757039424No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5280.10132392760712414No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)