FastQCFastQC Report
Wed 8 May 2024
EGAF00007960268

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960268
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences545077
Total Bases23.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14410.26436631888705636No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13370.24528644576821257No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT13340.24473606481286128No Hit
CATACGGTCCAGGTCTTCGGTCGCGGAGCGAGCACGGGTGCTGG12640.23189384252133186No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11890.21813431863755028No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10660.19556869946814856No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10050.18437762004267286No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9830.1803414930367636No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9590.1759384453939535No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9140.1676827310636846No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8840.16217892151017196No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7900.1449336515758324No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6240.11447923871306256No Hit
GGACTGGCCACGGTGGCCACCATCGTAGCGTTCCCAGCCGCTCG6200.11374539743926088No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6150.11282809584700877No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6070.1113604132994054No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5940.10897542915954993No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG5840.10714082597504573No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5520.10127009578463227No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)