FastQCFastQC Report
Wed 8 May 2024
EGAF00007960269

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960269
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences545077
Total Bases16.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27310.5010301296880991No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18690.3428873351838364No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17460.32032171601443465No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT14600.2678520649376143No Hit
ATGTCTTCTCGCCGCCGTAGCTCTTCCCGTC13030.23904879494089826No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11310.20749362016742587No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11280.20694323921207464No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10540.19336717564674347No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9810.17997457239986278No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9510.17447076284635016No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8910.1634631437393249No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8110.14878631826329122No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6840.1254868578200878No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6620.12145073081417854No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6480.11888228635587267No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6420.11778152444517014No Hit
GGTTGGGGTCGTCGCTACGAACCAGCACCGA6410.11759806412671972No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6350.11649730221601719No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT5900.10824158788574824No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)