FastQCFastQC Report
Wed 8 May 2024
EGAF00007960270

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960270
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526728
Total Bases23.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13450.255350009872268No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT13170.25003417323552196No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12960.24604729575796236No Hit
CATACGGTCCAGGTCTTCGGTCGCGGAGCGAGCACGGGTGCTGG12510.23750398687747754No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11300.2145319785543962No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10240.1944077398581431No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9890.18776294406221047No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9040.17162558284351695No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8850.16801840798286782No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8760.16630974620677086No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8130.15434911377409213No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7970.15131149283880865No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6010.11410063638158593No Hit
GGACTGGCCACGGTGGCCACCATCGTAGCGTTCCCAGCCGCTCG5930.1125818259139442No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5810.1103036102124816No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG5760.10935435367020549No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5750.10916450236175028No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)