FastQCFastQC Report
Wed 8 May 2024
EGAF00007960271

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960271
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526728
Total Bases16.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41210.7823772421439529No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28170.5348111359183487No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18130.34420042222931No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16780.31857049558785555No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT14110.2678801962303124No Hit
ATGTCTTCTCGCCGCCGTAGCTCTTCCCGTC12960.24604729575796236No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10970.20826688537537402No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10120.1921295241566805No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9900.1879527953706657No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9580.1818775535000987No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7870.14941297975425646No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7050.1338451724609286No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6450.12245409395361553No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6350.12055558086906334No Hit
GGTTGGGGTCGTCGCTACGAACCAGCACCGA6000.11391078507313074No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5950.11296152853085464No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5850.11106301544630247No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT5570.10574717880955636No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)