FastQCFastQC Report
Wed 8 May 2024
EGAF00007960281

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960281
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences575646
Total Bases17.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA25200.43776904555924995No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG21030.3653286915917074No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19380.33666524218008986No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11070.1923056878706705No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10630.18466210136090586No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10490.18223005110779888No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9730.16902749259093264No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9380.16294736695816528No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9300.16155762395638987No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9190.1596467273289487No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8780.1525242944448498No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8460.14696532243774818No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8240.14314352918286588No Hit
TCTAGCCTGTACCGTAACCACTCCACCTCTT8130.1412326325554247No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6800.11812815515090873No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5860.1017986748800478No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)