FastQCFastQC Report
Wed 8 May 2024
EGAF00007960283

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960283
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences551269
Total Bases17 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45880.8322615637737656No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24580.44588032339928424No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG19390.3517339084911359No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18010.32670075770631035No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11100.20135360413881426No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10100.18321363980198416No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10010.18158104301166944No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9150.16598067368199554No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9000.163259679031471No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8890.16126428295441972No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7990.1449383150512726No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7750.14058472361043337No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7700.13967772539359188No Hit
TCTAGCCTGTACCGTAACCACTCCACCTCTT7500.13604973252622585No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6260.11355617674855652No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5630.10212799921635356No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)