FastQCFastQC Report
Wed 8 May 2024
EGAF00007960284

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960284
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences575479
Total Bases25.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC20740.3603954271137609No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19010.3303335134731242No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12470.21668905381430079No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11240.19531555452066887No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10350.17985017698300027No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9350.16247334828899054No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9020.15673899481996736No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8880.15430623880280603No Hit
TTCGCCGGAACCCGGACCAGCTTCGGTTACGATCTCCATCAGGG7830.13606056867409583No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6840.11885750826702625No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6740.11711982539762528No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6210.10791010618980015No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)