FastQCFastQC Report
Wed 8 May 2024
EGAF00007960285

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960285
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences575479
Total Bases17.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA25050.43528955878494263No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG20770.3609167319745812No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19290.33519902550744685No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11300.19635816424230945No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11290.19618439595536935No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10560.18349931100874228No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10190.1770698843919587No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9890.1718568357837558No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9760.16959784805353453No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9000.15639145824608716No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8520.14805058047296252No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8270.1437063732994601No Hit
TCTAGCCTGTACCGTAACCACTCCACCTCTT8100.14075231242147845No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7550.13119505663977313No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6830.11868373998008615No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6410.11138547192860208No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)