FastQCFastQC Report
Wed 8 May 2024
EGAF00007960287

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960287
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences558623
Total Bases17.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43240.7740461814139411No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24100.431417968826919No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG20290.3632145471990949No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17880.320072750316403No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10660.19082637127364965No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10200.1825918374288205No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9520.17041904826689916No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9440.16898695542432016No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9150.16379561886997135No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9080.16254253763271473No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8290.14840062081224725No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8240.1475055627856354No Hit
TCTAGCCTGTACCGTAACCACTCCACCTCTT7980.1428512610472537No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7850.14052411017806285No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6550.11725260148615435No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6260.11206126493180553No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)