FastQCFastQC Report
Wed 8 May 2024
EGAF00007960288

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960288
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences531379
Total Bases23.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT31170.5865869746452156No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC28580.5378458689560559No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA20960.39444539584740834No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA20250.3810839344422719No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA17360.32669714083544893No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16460.309760077082459No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT15450.29075292775965933No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14910.28059068950786537No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT14900.28040249991060995No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA12690.23881259891715706No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC12670.23843621972264617No Hit
GGCAATGCCGGCGCGCCAACGACCATCACGCGCTTTGTCAGTGA11320.2130306240931614No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT10920.20550304020294363No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC10390.19552899154840517No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10230.1925179579923181No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT10120.19044787242250824No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9380.17652184222560546No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9200.17313442947500748No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8000.15055167780435433No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7740.14565874827571282No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6900.12985082210625562No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6860.12909806371723384No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6630.12476970298035865No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT6610.12439332378584778No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG6410.12062953184073891No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6390.12025315264622802No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6200.11667755029837461No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6050.11385470633954298No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5820.10952634560266777No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5740.10802082882462423No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5720.10764444963011334No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5640.10613893285206981No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5530.10406884728225993No Hit

[OK]Adapter Content

Adapter graph