FastQCFastQC Report
Wed 8 May 2024
EGAF00007960289

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960289
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences531379
Total Bases16.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC37910.713426763195384No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA35000.6586635903940502No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG31450.591856283368368No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT22770.4285077129506435No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA22630.4258730585890673No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG20270.3814603136367828No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18380.3458924797555041No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC16650.31333567943031243No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG16250.30580809554009475No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14610.27494500159020213No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG13890.2613953505878102No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG13010.24483466602933124No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12730.23956535730617884No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12600.23711889254185806No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC11640.21905269120533555No Hit
CTGAAGGCGACCACCACCCACCTGTTCGAAG11570.21773536402454746No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10970.20644398818922088No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10490.19741088752095962No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8660.16297219122321355No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8560.16109029525065913No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8100.15243357377690875No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8000.15055167780435433No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7360.13850754358000597No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC7250.1364374580101961No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6770.12740435734193487No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG6620.12458151338310322No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6570.12364056539682598No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6150.11573660231209738No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6010.11310194795052118No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5970.11234918956149942No Hit
GCGGCTGGTCTGGCAATTTCTCAGCGCATGA5960.11216099996424397No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5850.1100909143944341No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5530.10406884728225993No Hit
ATGGTGGTTCAGCACAACCTGACTGCGATGA5460.10275152010147182No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)