FastQCFastQC Report
Wed 8 May 2024
EGAF00007960290

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960290
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504261
Total Bases22.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT27830.5518967360156745No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC27080.537023485853556No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA20620.40891522445717593No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA18260.36211406394704326No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA17590.3488272938022175No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16920.33554052365739173No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT14540.2883427431429359No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14080.2792204830435033No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT13960.27684076301756433No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11920.2363855225766022No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC11320.22448692244690743No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT10870.2155629723496364No Hit
GGCAATGCCGGCGCGCCAACGACCATCACGCGCTTTGTCAGTGA10650.21120015230208164No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9850.19533535212915534No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9770.1937488721118627No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9460.18760126204485375No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9370.18581647202539953No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8430.16717533182221112No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7810.1548801116881932No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7660.1519054616557695No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7080.14040348153039794No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6710.13306601145041952No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6350.12592685137260268No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6350.12592685137260268No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT6340.1257285413704411No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6330.12553023136827954No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5930.11759783128181636No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5860.1162096612666853No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5740.11382994124074636No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5620.11145022121480741No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5570.11045867120399952No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5370.10649247116076793No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5290.10490599114347529No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)