FastQCFastQC Report
Wed 8 May 2024
EGAF00007960291

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960291
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504261
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41500.8229865089705529No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC35350.7010258576411819No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA33640.6671148472715519No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG27980.554871386048098No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA21530.42696143465387965No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT20660.40970846446582226No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG19810.392852114282088No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17350.3440678537503396No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15890.31511459343474907No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC15510.30757881335260906No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14040.27842724303485694No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12840.25463004277546747No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12270.24332637265225746No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG11440.2268666424728464No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC11200.2221072024209685No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11200.2221072024209685No Hit
CTGAAGGCGACCACCACCCACCTGTTCGAAG10730.2127866323193743No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9750.19335225210753956No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9180.18204858198432955No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9020.1788756219497443No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7490.14853419161902268No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7100.1408001015347211No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6780.13445418146555058No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC6700.13286770144825796No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6050.11997755130775531No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6020.11938262130127059No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5910.11720121127749321No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5880.11660628127100846No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5620.11145022121480741No Hit
GCGGCTGGTCTGGCAATTTCTCAGCGCATGA5580.1106569812061611No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5460.10827726118022214No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5340.1058975411542832No Hit
ATGGTGGTTCAGCACAACCTGACTGCGATGA5270.10450937113915214No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5130.10173303110889004No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)