FastQCFastQC Report
Wed 8 May 2024
EGAF00007960295

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960295
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508676
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41160.8091594649639455No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC36190.7114548356910882No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA33090.6505123103901108No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG28620.5626371206819272No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA21420.42109319095062475No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT21260.4179477702899292No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG20710.40713538676878797No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19460.38256178785710354No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15920.3129693557392132No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC15070.29625930847926774No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14250.28013902759320275No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG13400.26342898033325735No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12290.24160762449968154No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12060.2370860822999316No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG11690.22981229702207298No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC11060.21742720317058403No Hit
CTGAAGGCGACCACCACCCACCTGTTCGAAG11000.21624767042282317No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10710.21054659547531238No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9740.19147748271984524No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9470.1861695853549214No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8400.1651345846865195No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8060.15845056578254135No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC6890.13544967720120468No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6810.13387696687085687No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6680.1313213125840417No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT6170.12129528422807445No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6080.11952598510643318No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6030.1185430411499658No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5760.11323514378504196No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5700.1120556110372811No Hit
GCGGCTGGTCTGGCAATTTCTCAGCGCATGA5620.11048290070693328No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5550.10910677916787896No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5470.10753406883753115No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5320.10458523696812902No Hit
ATGGTGGTTCAGCACAACCTGACTGCGATGA5090.10006369476837909No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)