FastQCFastQC Report
Wed 31 May 2023
EGAF00007960296

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960296
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences570826
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT31590.5534085693363653No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT30480.5339630640510418No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC27180.4761521023919723No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC22950.4020489606289833No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT22520.3945160171400742No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA20020.35071983406502155No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT19160.3356539470872034No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA18860.3303984051181971No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT18590.3256684173460915No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15480.271185965600726No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG14550.25489378549680636No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT14370.2517404603154026No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT13750.24087900691278952No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13400.23474754128228217No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA12970.2272145977933731No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG12640.22143350162746617No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG12350.21635314439076006No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG11300.19795874749923792No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA10330.18096582846611753No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG10290.1802650895369167No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9950.1743088086387095No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG9770.17115548345730572No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9110.15959329112549184No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8950.15679033540868847No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8010.14032297057246867No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7640.13384113547736087No Hit
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGGCGG7640.13384113547736087No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7040.12333005153934823No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT6970.12210375841324678No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6870.12035191109024466No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6280.11001601188453225No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6110.10703787143542866No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6080.10651231723852804No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA6070.10633713250622781No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG5920.10370936152172465No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5790.10143196000182192No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5780.10125677526952172No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)