FastQCFastQC Report
Wed 8 May 2024
EGAF00007960297

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960297
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences570826
Total Bases17.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC36220.6345191003913627No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA31720.5556859708562679No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG30740.5385178670908473No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC23390.4097570888501926No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA21550.3775230981069538No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT20870.36561053631053947No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT20800.36438424318443796No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT19440.34055911959160934No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA19200.33635468601640434No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17230.3018432937532628No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16530.28958036249224806No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15890.2783685396250346No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA14400.25226601451230324No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC14180.2484119504016986No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG13950.24438270155879377No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC13620.23860160539288677No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA13430.2352730954791828No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12560.2200320237690645No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT11790.20654279938194828No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC11540.20216318107444298No Hit
ATGTCCAACATGGACATCGATGGTATTAACA10540.18464470784442194No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10380.18184175212761858No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC10140.17763731855241352No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9890.17325770024490825No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9780.17133066818960593No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9440.16537438729139878No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9230.16169550791309437No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8730.15293627129808382No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8610.1508340545104813No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT8170.14312592628927204No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT7120.12473152939774992No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6540.11457081492433771No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6400.11211822867213476No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6290.11019119661683245No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6240.1093152729553314No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT6050.10598676304162741No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5920.10370936152172465No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5900.10335899205712425No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)