FastQCFastQC Report
Wed 8 May 2024
EGAF00007960298

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960298
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences545537
Total Bases24 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT27650.5068400493458739No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT27620.5062901324749741No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC25360.4648630615338648No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC22490.4122543475511285No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT21240.3893411445969751No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA20140.36917752599732007No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT18650.3418649880759692No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17620.3229845088417468No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT16580.3039207239838911No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14220.26066059680644943No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG14110.2586442349464839No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT13650.2502121762593555No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT12770.23408128137963144No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12280.22509930582160328No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA12260.22473269457433687No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG12190.22344955520890425No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG12060.2210665821016723No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG10010.18348892925686067No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA9950.1823890955150613No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG9790.17945620553692965No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9630.17652331555879805No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG9500.17414034245156607No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9070.16625820063533728No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9000.16497506126990472No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8030.14719441577748163No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7530.13802913459582028No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT7030.1288638534141589No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6990.12813063091962598No Hit
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGGCGG6880.1261142690596605No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6640.12171493409246302No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6340.1162157653834662No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6020.11034998542720292No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5910.10833362356723743No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5760.10558403921273901No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA5590.10246784361097414No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG5510.10100139862190834No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)