FastQCFastQC Report
Wed 8 May 2024
EGAF00007960299

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960299
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences545537
Total Bases16.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45500.8340405875311849No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC33620.6162735066549107No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG27560.5051902987331748No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA27380.5018907975077768No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC22260.40803831820756425No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA21380.39190742332784023No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT19710.3612953841810913No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT18920.34681423991406635No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT18680.3424149049468689No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA16820.3083200589510886No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16350.2997046946403269No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15890.2912726359531984No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15420.2826572716424367No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA13620.2496622593884558No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC13100.24013036695952794No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13010.2384806163468289No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12680.2324315307669324No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA12520.22949864078880075No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11750.21538410776904224No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC11000.2016361859965502No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT10710.1963203229111866No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10010.18348892925686067No Hit
ATGTCCAACATGGACATCGATGGTATTAACA9620.1763400099351648No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC9320.17084084122616797No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9090.16662481188260375No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8730.16002580943180755No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8730.16002580943180755No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7870.14426152579935No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT7440.13637938398312122No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7380.13527955024132185No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT7190.13179674339229053No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6170.11309956978170133No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5810.10650056733090514No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5810.10650056733090514No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5810.10650056733090514No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5800.10631726170727192No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5630.10320106610550706No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5570.10210123236370769No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)