FastQCFastQC Report
Wed 8 May 2024
EGAF00007960301

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960301
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences571770
Total Bases17.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC35500.6208790247826923No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG31490.550745929307239No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA31110.544099900309565No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC23500.4110044248561484No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA21730.38004792136698323No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT21150.3699039823705336No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT20220.35363870087622645No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT19090.3338755093831436No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA17870.3125382583906116No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17670.30904034839183586No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16010.2800076954019973No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15770.2758102034034664No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA14570.254822743410812No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC14060.24590307291393393No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG14010.24502859541424No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA13870.242580058415097No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC13400.23435996991797403No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12660.22141770292250382No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC11640.20357836192874756No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT11080.19378421393217551No Hit
ATGTCCAACATGGACATCGATGGTATTAACA10910.19081099043321614No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10810.1890620354338283No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC10170.17786872343774596No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9990.1747206044388478No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9860.17244696293964357No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9850.17227206743970477No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9110.15932980044423456No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7910.1383423404515802No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT7770.13589380345243718No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT7710.13484443045280445No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7700.13466953495286565No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6720.11752977595886457No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6430.11245780646063977No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6420.11228291096070098No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6080.10633646396278224No Hit
ATGGAACCGGTCCAGCAGCGTCCGGTTATGT6010.10511219546321073No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6000.10493729996327195No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5920.10353813596376164No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5780.10108959896461864No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)