FastQCFastQC Report
Wed 8 May 2024
EGAF00007960302

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960302
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences550880
Total Bases24.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT28800.5227998838222481No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT28770.5222553006099332No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC25720.4668893406912576No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC21450.3893769968051118No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT20590.3737656113854197No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA18480.3354632587859425No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT17780.3227563171652628No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17780.3227563171652628No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT17640.32021492884112696No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15360.278826604705199No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG14660.2661196630845193No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT14340.26031077548649434No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT13000.23598605866976477No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12570.22818036595991867No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG12410.2252759221609062No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG12300.2232791170490851No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11850.2151103688643625No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG10360.18806273598605866No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG10310.18715509729886728No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA9850.17880482137670636No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9820.17826023816439152No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG9360.16990996224223062No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8960.1626488527446994No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8810.15992593668312519No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7680.1394133023525995No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7590.13777955271565495No Hit
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGGCGG7430.13487510891664248No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT6910.1254356665698519No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6720.12198663955852454No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6450.11708539064769097No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6320.11472553006099333No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6310.11454400232355504No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6220.11291025268661051No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG5910.10728289282602382No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5900.10710136508858555No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG5820.1056491431890793No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5640.10238164391519024No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA5580.10129247749056056No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)