FastQCFastQC Report
Wed 8 May 2024
EGAF00007960304

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960304
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534159
Total Bases23.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG16590.31058168073551135No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13440.2516104755325661No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13350.24992558395533915No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12630.2364464513375231No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG11600.21716380328703627No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9570.17916013771180492No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8510.15931585913557575No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7010.13123433284845898No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6490.12149940373559183No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5590.10465048796332178No Hit
CGGTTTGTCAACCGCGGTGGCGTCATCGTCGCTGCAATAGCTTG5550.103901647262332No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)