FastQCFastQC Report
Wed 8 May 2024
EGAF00007960305

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960305
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534159
Total Bases16.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA29460.5515211762789731No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG16320.3055270060038303No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14780.2766966390157238No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14340.2684593913048362No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12390.2319534071315844No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11400.21341959978208735No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8680.16249843211478232No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8190.1533251335276575No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6630.12412034618905607No Hit
AAATCCCCGTCTGCAGAAGCGTGCGGCTACT5540.10371443708708455No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5480.10259117603559989No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)