FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007960306

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960306
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512484
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG16240.3168879418674534No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13490.2632277300364499No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13420.2618618337352971No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11940.23298288336806613No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG11450.2234216092599964No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9640.188103433473045No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8650.16878575721388375No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5960.11629631364101123No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5830.11375964908172742No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5530.1079058077910725No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)