FastQCFastQC Report
Wed 8 May 2024
EGAF00007960307

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960307
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512484
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41680.8132936833149912No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28230.5508464654506287No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG15980.3118146127488858No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14260.2782525893491309No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12710.2480077426807471No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12410.24215390139009219No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10830.2113236705926429No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8510.16605396461157812No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7000.13658963011528166No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)