FastQCFastQC Report
Wed 8 May 2024
EGAF00007960308

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960308
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533124
Total Bases23.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG17020.3192503057450049No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14130.26504152880005405No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13650.25603799491300333No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12840.24084453147860535No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG11290.21177061996833757No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9810.18400972381659803No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8400.15756184302338666No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6480.12154770747518401No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6190.11610807241842425No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5550.10410336056902335No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)