FastQCFastQC Report
Wed 8 May 2024
EGAF00007960309

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960309
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533124
Total Bases16.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA30290.5681605029974265No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG16720.31362309706559827No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14490.27179417921534205No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13990.2624154980829976No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13050.24478357755419No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11100.2082067211380467No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9150.17162986472190336No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8260.15493581230633025No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7230.13561572917370068No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)