FastQCFastQC Report
Wed 8 May 2024
EGAF00007960310

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960310
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517436
Total Bases22.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG16270.31443502191575384No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13980.2701783408962654No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13660.2639940011904854No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12110.23403860574061336No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG11780.22766100541902765No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9320.18011889393084363No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8200.1584737049606135No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6370.1231070122681839No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6210.12001484241529388No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5570.1076461630037338No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)