FastQCFastQC Report
Wed 8 May 2024
EGAF00007960311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517436
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41480.8016450343617375No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA29140.5631614344575948No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG15850.3063180760519175No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14140.2732705107491554No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13780.26631312858015294No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11950.23094643588772332No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11130.215099065391662No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8020.15499501387611223No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7240.13992068584327338No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)