FastQCFastQC Report
Wed 8 May 2024
EGAF00007960313

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960313
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536606
Total Bases16.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT50400.9392366093558402No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16210.3020838380487732No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10580.1971651453766823No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA10330.1925062336239252No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9310.17349787367267605No Hit
ACCACCCTGGGTCGTAACTGCTACAACCTGT8180.15243959255021375No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC6920.12895867731631774No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6250.1164727938189286No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG6090.11349109029716402No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5370.10007342444922344No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)