FastQCFastQC Report
Wed 8 May 2024
EGAF00007960314

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960314
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514496
Total Bases22.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA24060.46764211966662517No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA21460.417107227267073No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16410.3189529170294813No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA10210.1984466351536261No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9410.1828974374922254No Hit
TTCGATGGTATCCGGTTCGTCAGAGTTGCTTTCCAGTGCCAGTT6700.13022453041423063No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG6440.1251710411742754No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5960.115841522577435No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5940.1154527926359No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA5540.10767819380519965No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5380.10456835427291951No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)