FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007960315

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960315
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514496
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT48960.9516108968777212No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42000.8163328772235353No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16000.3109839532280135No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA10170.19766917527055602No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9800.19047767135215823No Hit
ACCACCCTGGGTCGTAACTGCTACAACCTGT7360.14305261848488618No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC6290.12225556661276278No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6010.11681334743127254No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG5370.10437398930215201No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5300.10301343450677945No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)