FastQCFastQC Report
Wed 8 May 2024
EGAF00007960316

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960316
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533628
Total Bases23.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA25690.4814215146131762No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22600.4235160074059083No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14850.2782837482291034No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA10090.18908303162502715No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9890.18533510235594833No Hit
TTCGATGGTATCCGGTTCGTCAGAGTTGCTTTCCAGTGCCAGTT7380.13829859002900896No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG6550.1227446835623318No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6240.11693539319525961No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6200.11618580734144386No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6070.1137496533165426No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA5460.10231846904585216No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)