FastQCFastQC Report
Wed 8 May 2024
EGAF00007960317

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960317
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533628
Total Bases16.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT50110.9390436783677018No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14780.2769719729849258No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10430.1954545113824612No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA10270.1924561679671981No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9030.16921900649890936No Hit
ACCACCCTGGGTCGTAACTGCTACAACCTGT8270.15497687527640977No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC6600.12368166587960151No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6570.1231194764892397No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6400.11993373661052269No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)