FastQCFastQC Report
Wed 8 May 2024
EGAF00007960318

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960318
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521722
Total Bases22.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA25880.49604962029586636No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA21640.4147802852860335No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15390.2949846853305017No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA10350.1983815135263608No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9090.17423072057532557No Hit
TTCGATGGTATCCGGTTCGTCAGAGTTGCTTTCCAGTGCCAGTT7230.13857955002855926No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG6470.12401240507396659No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5840.11193700859844899No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5730.10982860603923161No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA5640.10810354939987196No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5470.1048451090810815No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)