FastQCFastQC Report
Wed 8 May 2024
EGAF00007960319

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960319
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521722
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT53721.0296671407377875No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41520.7958261296245893No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15540.29785977972943445No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA10330.19799816760650307No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9720.18630611705084316No Hit
ACCACCCTGGGTCGTAACTGCTACAACCTGT8020.15372171386293848No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC6550.1255457887533974No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5830.11174533563852013No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5660.10848689531972966No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG5400.10350339836157954No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)