FastQCFastQC Report
Wed 8 May 2024
EGAF00007960321

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960321
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532947
Total Bases16.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA20410.3829649102068311No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14780.2773258879400766No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9410.17656539956130723No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8830.16568251627272504No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7750.14541783704570999No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6120.11483318228641873No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)