FastQCFastQC Report
Wed 8 May 2024
EGAF00007960323

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960323
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511045
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42070.8232151767456878No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18540.3627860560224638No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13400.26220782905614964No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8500.1663258617147218No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6940.13580017415296108No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5840.11427565087223238No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)