FastQCFastQC Report
Wed 8 May 2024
EGAF00007960325

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960325
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences531220
Total Bases16.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA19840.37347991415985843No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13430.25281427657091227No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9650.18165731711908437No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8820.16603290538759835No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7430.1398667218854712No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6420.12085388351342193No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)