FastQCFastQC Report
Wed 8 May 2024
EGAF00007960327

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960327
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518961
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41800.8054555159250888No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19620.378063091446178No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14440.27824826913775796No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8500.16378880108524535No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7770.14972223346263014No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6050.11657908783126285No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)