FastQCFastQC Report
Wed 8 May 2024
EGAF00007960329

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960329
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509809
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19870.38975380976012586No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11420.22400546086867829No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11330.22224009383906523No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9460.18555969000154962No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9020.1769290067456636No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7430.14574085588916633No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7320.14358318507519482No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6740.1322063753287996No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6020.11808343909189518No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5640.11062966718908454No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5600.10984505962036763No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5450.10690278123767921No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5300.1039605028549908No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5300.1039605028549908No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5220.10239128771755697No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5130.10062592068794392No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)