FastQCFastQC Report
Wed 8 May 2024
EGAF00007960330

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960330
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485398
Total Bases21.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11170.23012043724943243No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9490.19550966423429847No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7700.15863270965269738No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6740.13885512507262082No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6400.13185056386717703No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6300.12979039880675242No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5790.11928355699858673No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5780.11907754049254426No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5380.1108368802508457No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5110.10527443458769918No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4960.1021841869970622No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4870.10033003844268003No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)