FastQCFastQC Report
Wed 8 May 2024
EGAF00007960331

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960331
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485398
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41950.864239242848137No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18030.37144776039456284No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11280.23238661881589953No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10670.21981961194730923No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8860.18253062435362322No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6680.13761902603636603No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6570.13535284446989893No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6250.12876031627654008No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5750.11845949097441687No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5600.11536924338377991No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5390.11104289675688817No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5250.10815866567229367No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5190.10692256663603888No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5160.10630451711791149No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)