FastQCFastQC Report
Wed 8 May 2024
EGAF00007960333

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960333
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507012
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18490.364685648465914No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11800.2327361088100479No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11180.2205076013979945No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9420.18579441906700433No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9210.18165250526614754No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7340.14476974903947046No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7150.14102230321964765No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6840.13490804951362098No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5590.11025380069899725No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5530.10907039675589533No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5450.10749252483175942No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5410.10670358886969145No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)