FastQCFastQC Report
Wed 8 May 2024
EGAF00007960334

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960334
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491306
Total Bases21.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10910.2220612001481765No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10310.20984885183571947No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8230.1675127110192019No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6450.13128274435891277No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6400.13026504866620803No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6150.12517657020268427No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5750.11703500466104629No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5360.10909697825794921No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5060.10299080410172072No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5010.10197310840901597No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5010.10197310840901597No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4930.10034479530068836No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)