FastQCFastQC Report
Wed 8 May 2024
EGAF00007960335

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960335
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491306
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41380.8422449552824512No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20180.4107419815756371No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11330.23060984396689638No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11290.2297956874127326No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8560.17422950259105324No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6590.13413229229848606No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6420.13067212694328992No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5980.12171640484748812No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5640.11479607413709583No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5470.11133590878189967No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5300.10787574342670352No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5270.10726512601108068No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4990.10156603013193406No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4940.10054833443922932No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4930.10034479530068836No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)