FastQCFastQC Report
Wed 8 May 2024
EGAF00007960336

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960336
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences573344
Total Bases25.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT7560.13185801194396382No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT7350.12819528938996483No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6950.12121867500139531No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6670.11633504492939667No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5960.10395155438968576No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5920.10325389295082882No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)